species:   Rhsol
pid:       PID0553
parent:    Rhi-milR-24
paralog:   
locus:     KB317725.1:309196-309288
matures:   ['AGGAACUGCCAGCAGGGUGGGC', 'CAACCUUGCUGGCAACCUUGG']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317725.1:309196-309288

16 out of bounds
36 alignments
18 proper strand
16 stranded perfect matches

       *************************                              ************************       
CCCCCCCCCCAGGAACUGCCAGCAGGGUGGGCCCAGAUGUUUUUGGCAAUGUUGCCAAGUUUUACAACCUUGCUGGCAACCUUGGCUAGCCCU
........(((((...((((((((((((.(....((((....((((((....))))))))))..).))))))))))))..)))))........
----------AGGAACUGCCAGCAGGGUGGGC------------------------------------------------------------- l=22 a=0 c
----------------------------------------------------------------CAACCUUGCUGGCAACCUUGG-------- l=21 a=0 c*
---------CAGGAACUGCCAGCAGGGUGGGC------------------------------------------------------------- l=23 a=3 ma
----------------------------------------------------------------CAACCUUGCUGGCAACCUUGGC------- l=22 a=1 ma*

----------------------------------------------------------------CAACCUUGCUGGCAACCUUGGC------- l=22 a=1 (ma*)
---------------------------------------------------------------ACAACCUUGCUGGCAACCUUGGC------- l=23 a=1 
--------------------------------------------------------------UACAACCUUGCUGGCAACCUUGG-------- l=23 a=1 
-------------------------------------------------------------UUACAACCUUGCUGGCAACCUU---------- l=22 a=2 
----------AGGAACUGCCAGCAGGGUGG--------------------------------------------------------------- l=20 a=1 
----------AGGAACUGCCAGCAGGGUGGG-------------------------------------------------------------- l=21 a=2 
----------AGGAACUGCCAGCAGGGUGGGCa------------------------------------------------------------ l=23 a=1 
---------CAGGAACUGCCAGCAGGGUGG--------------------------------------------------------------- l=21 a=1 
---------CAGGAACUGCCAGCAGGGUGGG-------------------------------------------------------------- l=22 a=1 
---------CAGGAACUGCCAGCAGGGUGGGC------------------------------------------------------------- l=23 a=3 (ma)
---------CAGGAACUGCCAGCAGGGUGGGCa------------------------------------------------------------ l=24 a=1 
--------CCAGGAACUGCCAGCAGGGUGG--------------------------------------------------------------- l=22 a=1 
-------CCCAGGAACUGCCAGCAGGGUG---------------------------------------------------------------- l=22 a=1 
--CCCCCCCCAG--------------------------------------------------------------------------------- l=10 a=1 

mb-01011
ax-1101011
ku-01
ss-111110001101
fn-101
